Source
- PDF: raw/sources/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney.pdf
- Article: https://www.nature.com/articles/s41596-023-00880-1
- Status: deep ingested on 2026-04-08
- Organ focus: kidney
- Protocol focus: kidney organoid generation with improved proximal tubules
Study design
- Starting material: human pluripotent stem cells
- Protocol type: stepwise derivation and maturation protocol
- Aim: kidney organoid generation with improved proximal tubules
- Core readouts: organoid morphology, lineage markers, and downstream functional assays
Summary
- This paper is best understood as a stepwise derivation and maturation protocol for kidney organoid generation with improved proximal tubules.
- Its main distinctive contribution in this corpus is that it optimizes kidney differentiation toward stronger proximal-tubule representation.
- Within this collection, it belongs to the baseline derivation branch of organoid protocol work.
- Paper framing: Kidney organoids derived from human pluripotent stem cells (hPSCs) are now being used as models of renal disease and nephrotoxicity screening.
Key findings
- Defines a workflow centered on kidney organoid generation with improved proximal tubules.
- Its distinctive focus in practice is the way it optimizes kidney differentiation toward stronger proximal-tubule representation.
- Serves as a baseline generation protocol that other assay, maturation, or perturbation papers can build on.
Strengths
- Useful as a starting-point protocol for building this organ system from stem cells.
- Makes lineage commitments and media transitions explicit enough to anchor comparison across later protocols.
Limitations and caveats
- Still likely to depend on stem-cell line quality, timing precision, and local optimization.
- Baseline derivation protocols often need additional maturation or assay layers before they answer higher-order biological questions.
Relevance to this corpus
- Specific role in this corpus: Shows the field moving from generic kidney organoids toward segment-biased refinement.
- This paper broadens the collection's coverage of kidney organoid work.
- It is most valuable as a baseline protocol to compare against later assay, maturation, or refinement papers.
Related concepts
Open questions
- Which steps in this kidney workflow drive the most variability across lines or batches?
- What extra maturation or assay layer is usually needed after the baseline derivation works?
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Parsed Artifacts
- Parser: OpenDataLoader PDF
- Generated: 2026-04-12T12:46:07+09:00
- Command:
/Users/davin/paper_collect/.venv-opendataloader/bin/opendataloader-pdf /Users/davin/paper_collect/collections/organoid/raw/sources/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney.pdf -o /Users/davin/paper_collect/collections/organoid/raw/derived/opendataloader/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney -f json,markdown - Manifest: raw/derived/opendataloader/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney/opendataloader-run.json
- Output: raw/derived/opendataloader/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney.json
- Output: raw/derived/opendataloader/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney.md
- Output: raw/derived/opendataloader/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney_images/imageFile1.png
- Output: raw/derived/opendataloader/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney_images/imageFile10.png
- Output: raw/derived/opendataloader/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney_images/imageFile11.png
- Output: raw/derived/opendataloader/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney_images/imageFile12.png
- Output: raw/derived/opendataloader/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney_images/imageFile13.png
- Output: raw/derived/opendataloader/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney_images/imageFile14.png
- Output: raw/derived/opendataloader/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney_images/imageFile15.png
- Output: raw/derived/opendataloader/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney_images/imageFile16.png
- Output: raw/derived/opendataloader/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney_images/imageFile17.png
- Output: raw/derived/opendataloader/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney_images/imageFile18.png
- Output: raw/derived/opendataloader/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney_images/imageFile19.png
- Output: raw/derived/opendataloader/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney_images/imageFile2.png
- Output: raw/derived/opendataloader/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney_images/imageFile20.png
- Output: raw/derived/opendataloader/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney_images/imageFile21.png
- Output: raw/derived/opendataloader/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney_images/imageFile22.png
- Output: raw/derived/opendataloader/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney_images/imageFile23.png
- Output: raw/derived/opendataloader/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney_images/imageFile24.png
- Output: raw/derived/opendataloader/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney_images/imageFile25.png
- Output: raw/derived/opendataloader/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney_images/imageFile26.png
- Output: raw/derived/opendataloader/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney_images/imageFile27.png
- Output: raw/derived/opendataloader/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney_images/imageFile28.png
- Output: raw/derived/opendataloader/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney_images/imageFile29.png
- Output: raw/derived/opendataloader/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney_images/imageFile3.png
- Output: raw/derived/opendataloader/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney_images/imageFile30.png
- Output: raw/derived/opendataloader/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney_images/imageFile31.png
- Output: raw/derived/opendataloader/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney_images/imageFile32.png
- Output: raw/derived/opendataloader/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney_images/imageFile33.png
- Output: raw/derived/opendataloader/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney_images/imageFile34.png
- Output: raw/derived/opendataloader/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney_images/imageFile35.png
- Output: raw/derived/opendataloader/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney_images/imageFile36.png
- Output: raw/derived/opendataloader/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney_images/imageFile37.png
- Output: raw/derived/opendataloader/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney_images/imageFile38.png
- Output: raw/derived/opendataloader/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney_images/imageFile39.png
- Output: raw/derived/opendataloader/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney_images/imageFile4.png
- Output: raw/derived/opendataloader/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney_images/imageFile40.png
- Output: raw/derived/opendataloader/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney_images/imageFile41.png
- Output: raw/derived/opendataloader/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney_images/imageFile42.png
- Output: raw/derived/opendataloader/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney_images/imageFile43.png
- Output: raw/derived/opendataloader/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney_images/imageFile44.png
- Output: raw/derived/opendataloader/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney_images/imageFile45.png
- Output: raw/derived/opendataloader/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney_images/imageFile46.png
- Output: raw/derived/opendataloader/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney_images/imageFile47.png
- Output: raw/derived/opendataloader/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney_images/imageFile48.png
- Output: raw/derived/opendataloader/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney_images/imageFile49.png
- Output: raw/derived/opendataloader/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney_images/imageFile5.png
- Output: raw/derived/opendataloader/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney_images/imageFile50.png
- Output: raw/derived/opendataloader/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney_images/imageFile51.png
- Output: raw/derived/opendataloader/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney_images/imageFile52.png
- Output: raw/derived/opendataloader/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney_images/imageFile53.png
- Output: raw/derived/opendataloader/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney_images/imageFile54.png
- Output: raw/derived/opendataloader/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney_images/imageFile55.png
- Output: raw/derived/opendataloader/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney_images/imageFile56.png
- Output: raw/derived/opendataloader/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney_images/imageFile57.png
- Output: raw/derived/opendataloader/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney_images/imageFile58.png
- Output: raw/derived/opendataloader/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney_images/imageFile6.png
- Output: raw/derived/opendataloader/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney_images/imageFile7.png
- Output: raw/derived/opendataloader/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney_images/imageFile8.png
- Output: raw/derived/opendataloader/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney/vanslambrouck_2023_generation_of_proximal_tubule-enhanced_kidney_images/imageFile9.png
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