Source
- PDF: raw/sources/pomeshchik_2020_human_ipsc-derived_hippocampal_spheroids_an.pdf
- Article: https://www.sciencedirect.com/science/article/pii/S2213671120301922
- Status: deep ingested on 2026-04-10
- Organ focus: hippocampus
- Protocol focus: hippocampal spheroid generation from hiPSCs for disease modeling
Study design
- Starting material: human pluripotent stem cells
- Protocol type: stepwise derivation and maturation protocol
- Aim: hippocampal spheroid generation from hiPSCs for disease modeling
- Core readouts: organoid morphology, lineage markers, and downstream functional assays
Summary
- This paper is best understood as a stepwise derivation and maturation protocol for hippocampal spheroid generation from hiPSCs for disease modeling.
- Its main distinctive contribution in this corpus is that it creates free-floating hippocampal spheroids from human iPSCs that preserve hippocampal marker identity and support early Alzheimer-related phenotype readouts.
- Within this collection, it belongs to the baseline derivation branch of organoid protocol work.
- Paper framing: Here, the authors report a chemical strategy for rapidly generating free-floating hippocampal spheroids from human iPSCs, then use them to read out early Alzheimer-related phenotypes and NeuroD1-response programs.
Key findings
- Defines a workflow centered on hippocampal spheroid generation from hiPSCs for disease modeling.
- Its distinctive focus in practice is the way it creates free-floating hippocampal spheroids from human iPSCs that preserve hippocampal marker identity and support early Alzheimer-related phenotype readouts.
- Serves as a baseline generation protocol that other assay, maturation, or perturbation papers can build on.
Strengths
- Useful as a starting-point protocol for building this organ system from stem cells.
- Makes lineage commitments and media transitions explicit enough to anchor comparison across later protocols.
Limitations and caveats
- Still likely to depend on stem-cell line quality, timing precision, and local optimization.
- Baseline derivation protocols often need additional maturation or assay layers before they answer higher-order biological questions.
Relevance to this corpus
- Specific role in this corpus: Adds a hippocampus-biased disease-modeling protocol that is more region-specific than generic cerebral organoids.
- This paper broadens the collection's coverage of hippocampus organoid work.
- It is most valuable as a baseline protocol to compare against later assay, maturation, or refinement papers.
Related concepts
- Self-organization and directed patterning
- Brain organoid patterning and assembloids
- Brain subregion-specific organoid protocols
Open questions
- Which steps in this hippocampus workflow drive the most variability across lines or batches?
- What extra maturation or assay layer is usually needed after the baseline derivation works?
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Parsed Artifacts
- Parser: OpenDataLoader PDF
- Generated: 2026-04-12T12:45:01+09:00
- Command:
/Users/davin/paper_collect/.venv-opendataloader/bin/opendataloader-pdf /Users/davin/paper_collect/collections/organoid/raw/sources/pomeshchik_2020_human_ipsc-derived_hippocampal_spheroids_an.pdf -o /Users/davin/paper_collect/collections/organoid/raw/derived/opendataloader/pomeshchik_2020_human_ipsc-derived_hippocampal_spheroids_an -f json,markdown - Manifest: raw/derived/opendataloader/pomeshchik_2020_human_ipsc-derived_hippocampal_spheroids_an/opendataloader-run.json
- Output: raw/derived/opendataloader/pomeshchik_2020_human_ipsc-derived_hippocampal_spheroids_an/pomeshchik_2020_human_ipsc-derived_hippocampal_spheroids_an.json
- Output: raw/derived/opendataloader/pomeshchik_2020_human_ipsc-derived_hippocampal_spheroids_an/pomeshchik_2020_human_ipsc-derived_hippocampal_spheroids_an.md
- Output: raw/derived/opendataloader/pomeshchik_2020_human_ipsc-derived_hippocampal_spheroids_an/pomeshchik_2020_human_ipsc-derived_hippocampal_spheroids_an_images/imageFile1.png
- Output: raw/derived/opendataloader/pomeshchik_2020_human_ipsc-derived_hippocampal_spheroids_an/pomeshchik_2020_human_ipsc-derived_hippocampal_spheroids_an_images/imageFile10.png
- Output: raw/derived/opendataloader/pomeshchik_2020_human_ipsc-derived_hippocampal_spheroids_an/pomeshchik_2020_human_ipsc-derived_hippocampal_spheroids_an_images/imageFile11.png
- Output: raw/derived/opendataloader/pomeshchik_2020_human_ipsc-derived_hippocampal_spheroids_an/pomeshchik_2020_human_ipsc-derived_hippocampal_spheroids_an_images/imageFile2.png
- Output: raw/derived/opendataloader/pomeshchik_2020_human_ipsc-derived_hippocampal_spheroids_an/pomeshchik_2020_human_ipsc-derived_hippocampal_spheroids_an_images/imageFile3.png
- Output: raw/derived/opendataloader/pomeshchik_2020_human_ipsc-derived_hippocampal_spheroids_an/pomeshchik_2020_human_ipsc-derived_hippocampal_spheroids_an_images/imageFile4.png
- Output: raw/derived/opendataloader/pomeshchik_2020_human_ipsc-derived_hippocampal_spheroids_an/pomeshchik_2020_human_ipsc-derived_hippocampal_spheroids_an_images/imageFile5.png
- Output: raw/derived/opendataloader/pomeshchik_2020_human_ipsc-derived_hippocampal_spheroids_an/pomeshchik_2020_human_ipsc-derived_hippocampal_spheroids_an_images/imageFile6.png
- Output: raw/derived/opendataloader/pomeshchik_2020_human_ipsc-derived_hippocampal_spheroids_an/pomeshchik_2020_human_ipsc-derived_hippocampal_spheroids_an_images/imageFile7.png
- Output: raw/derived/opendataloader/pomeshchik_2020_human_ipsc-derived_hippocampal_spheroids_an/pomeshchik_2020_human_ipsc-derived_hippocampal_spheroids_an_images/imageFile8.png
- Output: raw/derived/opendataloader/pomeshchik_2020_human_ipsc-derived_hippocampal_spheroids_an/pomeshchik_2020_human_ipsc-derived_hippocampal_spheroids_an_images/imageFile9.png
These parsed files are helper artifacts. Treat the original raw PDF as the source of truth. <!-- opendataloader:end -->